什么是JNI内存泄露，基本的避免方法 ：
http://www.ibm.com/developerworks/cn/java/j-lo-jnileak/
最近的课题中需要用到Spark，同组同学负责的算法用c++写的，数据库读取及调用算法用的是java，因此在整合的时候用到了jni。
因为任务需要并行，因此想到了用多线程实现。
程序在单机单线程的情况下运行没问题，当开两个线程的时候就出现了如下错误：
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x7c930cce, pid=6224, tid=736
#
# JRE version: Java(TM) SE Runtime Environment (8.0_11-b12) (build 1.8.0_11-b12)
# Java VM: Java HotSpot(TM) Client VM (25.11-b03 mixed mode windows-x86 )
# Problematic frame:
# [thread 4240 also had an error]
C [ntdll.dll+0x10cce]
#
# Failed to write core dump. Minidumps are not enabled by default on client versions of Windows
#
# An error report file with more information is saved as:
# E:\eclipse4EE\workspace\MongoLoc\hs_err_pid6224.log
#
# If you would like to submit a bug report, please visit:
# http://bugreport.sun.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
java虚拟机崩溃。
JVM错误日志文件如下：
#
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x0000000e, pid=6240, tid=1404
#
# JRE version: Java(TM) SE Runtime Environment (8.0_11-b12) (build 1.8.0_11-b12)
# Java VM: Java HotSpot(TM) Client VM (25.11-b03 mixed mode windows-x86 )
# Problematic frame:
# C 0x0000000e
#
# Failed to write core dump. Minidumps are not enabled by default on client versions of Windows
#
# If you would like to submit a bug report, please visit:
# http://bugreport.sun.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#--------------- T H R E A D ---------------Current thread (0x0b1f3400): JavaThread "Thread-0" [_thread_in_native, id=1404, stack(0x0b5d0000,0x0b620000)]siginfo: ExceptionCode=0xc0000005, reading address 0x0000000eRegisters:
EAX=0x0000000e, EBX=0x003e8748, ECX=0x474e5543, EDX=0x432b2b00
ESP=0x0b61f4ec, EBP=0x0b61f548, ESI=0x0b61f528, EDI=0x0b1f3400
EIP=0x0000000e, EFLAGS=0x00010202Top of Stack: (sp=0x0b61f4ec)
0x0b61f4ec: 66396350 00000001 00000001 432b2b00
0x0b61f4fc: 474e5543 003e8748 0b61f528 ffffffff
0x0b61f50c: 7c9301db 77bfc3c9 00000064 003e8768
0x0b61f51c: 0b66f6cc 0b1f3400 0b61f534 0bc450b8
0x0b61f52c: 0b66f80c 0bd486a0 66383940 664055d0
0x0b61f53c: 003e8748 0bc450b8 0b1f3400 0b61f568
0x0b61f54c: 6638588e 003e8748 00000000 00000000
0x0b61f55c: 77bfc42e 00000028 0bc450b8 0b61f588 Instructions: (pc=0x0000000e)
0xffffffee: Register to memory mapping:EAX=0x0000000e is an unknown value
EBX=0x003e8748 is an unknown value
ECX=0x474e5543 is an unknown value
EDX=0x432b2b00 is an unknown value
ESP=0x0b61f4ec is pointing into the stack for thread: 0x0b1f3400
EBP=0x0b61f548 is pointing into the stack for thread: 0x0b1f3400
ESI=0x0b61f528 is pointing into the stack for thread: 0x0b1f3400
EDI=0x0b1f3400 is a threadStack: [0x0b5d0000,0x0b620000], sp=0x0b61f4ec, free space=317k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C 0x0000000e
C [SpeedEstimate.dll+0x588e]
C [SpeedEstimate.dll+0x4824]
C [SpeedEstimate.dll+0x261c8]
C [SpeedEstimate.dll+0x58ca6]
C [SpeedEstimate.dll+0x58dbc]
C [SpeedEstimate.dll+0x7468f]
C [SpeedEstimate.dll+0x228d0]
C [SpeedEstimate.dll+0x1b8c]
C [SpeedEstimate.dll+0x20b24]
C [SpeedEstimate.dll+0x2aa0]
C [SpeedEstimate.dll+0x2bf5]
j tong.mongo.loction.LinkedC.StreetEstimate(Ltong/mongo/defclass/MapLoc;Ltong/mongo/defclass/Car;)Ltong/mongo/defclass/StreetEstimateOutput;+0
j tong.mongo.loction.MdbThread2.run()V+1207
j java.lang.Thread.run()V+11
v ~StubRoutines::call_stub
V [jvm.dll+0x142295]
V [jvm.dll+0x2073ae]
V [jvm.dll+0x14232e]
V [jvm.dll+0x1424b6]
V [jvm.dll+0x142527]
V [jvm.dll+0xedebf]
V [jvm.dll+0x1646ac]
V [jvm.dll+0x164f3a]
V [jvm.dll+0x1a9316]
C [msvcr100.dll+0x5c556]
C [msvcr100.dll+0x5c600]
C [kernel32.dll+0xb729]Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j tong.mongo.loction.LinkedC.StreetEstimate(Ltong/mongo/defclass/MapLoc;Ltong/mongo/defclass/Car;)Ltong/mongo/defclass/StreetEstimateOutput;+0
j tong.mongo.loction.MdbThread2.run()V+1207
j java.lang.Thread.run()V+11
v ~StubRoutines::call_stub--------------- P R O C E S S ---------------Java Threads: ( => current thread )
0x0b6c1800 JavaThread "MongoCleaner1963207" daemon [_thread_blocked, id=6808, stack(0x0bb80000,0x0bbd0000)]
0x0b6b4800 JavaThread "MongoCleaner19725142" daemon [_thread_blocked, id=7236, stack(0x0bb30000,0x0bb80000)]
0x0b6ac400 JavaThread "cluster-2-127.0.0.1:27017" daemon [_thread_blocked, id=8120, stack(0x0bae0000,0x0bb30000)]
0x0b6ab800 JavaThread "cluster-1-127.0.0.1:27017" daemon [_thread_blocked, id=7252, stack(0x0ba90000,0x0bae0000)]
0x0b1f4800 JavaThread "Thread-1" [_thread_in_native, id=3284, stack(0x0b620000,0x0b670000)]
=>0x0b1f3400 JavaThread "Thread-0" [_thread_in_native, id=1404, stack(0x0b5d0000,0x0b620000)]
0x0b1a8800 JavaThread "Service Thread" daemon [_thread_blocked, id=7368, stack(0x0b440000,0x0b490000)]
0x0b174400 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=6272, stack(0x0b3f0000,0x0b440000)]
0x0b172800 JavaThread "Attach Listener" daemon [_thread_blocked, id=6572, stack(0x0b3a0000,0x0b3f0000)]
0x0b187400 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=7200, stack(0x0b350000,0x0b3a0000)]
0x02b4e400 JavaThread "Finalizer" daemon [_thread_blocked, id=6180, stack(0x0b100000,0x0b150000)]
0x02b48400 JavaThread "Reference Handler" daemon [_thread_blocked, id=7344, stack(0x0b0b0000,0x0b100000)]
0x0086a000 JavaThread "main" [_thread_in_native, id=5080, stack(0x00950000,0x009a0000)]Other Threads:
0x02b45000 VMThread [stack: 0x0b060000,0x0b0b0000] [id=6344]
0x0b1aa800 WatcherThread [stack: 0x0b490000,0x0b4e0000] [id=3048]VM state:not at safepoint (normal execution)VM Mutex/Monitor currently owned by a thread: NoneHeap:
def new generation total 58944K, used 22049K [0x02c00000, 0x06bf0000, 0x06c00000)
eden space 52416K, 42% used [0x02c00000, 0x041884a0, 0x05f30000)
from space 6528K, 0% used [0x05f30000, 0x05f30000, 0x06590000)
to space 6528K, 0% used [0x06590000, 0x06590000, 0x06bf0000)
tenured generation total 64K, used 0K [0x06c00000, 0x06c10000, 0x0ac00000)
the space 64K, 0% used [0x06c00000, 0x06c00000, 0x06c00200, 0x06c10000)
Metaspace used 4583K, capacity 4630K, committed 4736K, reserved 5504KCard table byte_map: [0x02b50000,0x02ba0000] byte_map_base: 0x02b3a000Polling page: 0x009a0000CodeCache: size=32768Kb used=1110Kb max_used=1110Kb free=31657Kb
bounds [0x009d0000, 0x00ae8000, 0x029d0000]
total_blobs=430 nmethods=266 adapters=96
compilation: enabledCompilation events (10 events):
Event: 4.095 Thread 0x0b174400 258 org.bson.io.OutputBuffer::writeInt (32 bytes)
Event: 4.095 Thread 0x0b174400 nmethod 258 0x00ae4608 code [0x00ae4730, 0x00ae4840]
Event: 4.102 Thread 0x0b174400 259 java.util.TreeMap::getFirstEntry (26 bytes)
Event: 4.102 Thread 0x0b174400 nmethod 259 0x00ae4908 code [0x00ae4a00, 0x00ae4aa0]
Event: 4.119 Thread 0x0b174400 261 tong.mongo.defclass.Line::<init> (5 bytes)
Event: 4.119 Thread 0x0b174400 nmethod 261 0x00ae4e08 code [0x00ae4f00, 0x00ae4f80]
Event: 4.137 Thread 0x0b174400 262 java.util.TreeMap$KeyIterator::next (8 bytes)
Event: 4.137 Thread 0x0b174400 nmethod 262 0x00ae4fc8 code [0x00ae50d0, 0x00ae516c]
Event: 4.148 Thread 0x0b174400 263 java.util.AbstractSet::<init> (5 bytes)
Event: 4.148 Thread 0x0b174400 nmethod 263 0x00ae5208 code [0x00ae5300, 0x00ae5380]GC Heap History (0 events):
No eventsDeoptimization events (0 events):
No eventsInternal exceptions (10 events):
Event: 4.007 Thread 0x0b1f4800 Exception <a 'java/security/PrivilegedActionException'> (0x0364b298) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]
Event: 4.008 Thread 0x0b1f3400 Exception <a 'java/security/PrivilegedActionException'> (0x03318b20) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]
Event: 4.010 Thread 0x0b1f3400 Exception <a 'java/security/PrivilegedActionException'> (0x0331bde0) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]
Event: 4.011 Thread 0x0b1f3400 Exception <a 'java/security/PrivilegedActionException'> (0x0331f908) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]
Event: 4.011 Thread 0x0b1f3400 Exception <a 'java/security/PrivilegedActionException'> (0x03322820) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]
Event: 4.019 Thread 0x0b1f3400 Exception <a 'java/security/PrivilegedActionException'> (0x03755ea8) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]
Event: 4.023 Thread 0x0b1f3400 Exception <a 'java/security/PrivilegedActionException'> (0x0375ec58) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]
Event: 4.066 Thread 0x0b1f4800 Exception <a 'java/security/PrivilegedActionException'> (0x03871610) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]
Event: 4.067 Thread 0x0b1f4800 Exception <a 'java/security/PrivilegedActionException'> (0x03875760) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]
Event: 4.131 Thread 0x0b1f3400 Exception <a 'java/security/PrivilegedActionException'> (0x03f5b5b8) thrown at [D:\re\puppet\workspace\8-2-build-windows-i586-cygwin\jdk8u11\648\hotspot\src\share\vm\prims\jvm.cpp, line 1248]Events (10 events):
Event: 4.023 loading class tong/mongo/defclass/Line
Event: 4.023 loading class tong/mongo/defclass/Line done
Event: 4.066 loading class com/mongodb/QueryResultIterator$OptionalFinalizer
Event: 4.066 loading class com/mongodb/QueryResultIterator$OptionalFinalizer done
Event: 4.067 loading class com/mongodb/ServerAddressSelector
Event: 4.067 loading class com/mongodb/ServerAddressSelector done
Event: 4.131 loading class tong/mongo/loction/LinkedC
Event: 4.131 loading class tong/mongo/loction/LinkedC done
Event: 4.132 loading class java/lang/ClassLoaderHelper
Event: 4.132 loading class java/lang/ClassLoaderHelper doneDynamic libraries:
0x00400000 - 0x00430000 C:\Program Files\Java\jdk8\bin\javaw.exe
0x7c920000 - 0x7c9b6000 C:\WINDOWS\system32\ntdll.dll
0x7c800000 - 0x7c91e000 C:\WINDOWS\system32\kernel32.dll
0x77da0000 - 0x77e49000 C:\WINDOWS\system32\ADVAPI32.dll
0x77e50000 - 0x77ee3000 C:\WINDOWS\system32\RPCRT4.dll
0x77fc0000 - 0x77fd1000 C:\WINDOWS\system32\Secur32.dll
0x77d10000 - 0x77da0000 C:\WINDOWS\system32\USER32.dll
0x77ef0000 - 0x77f39000 C:\WINDOWS\system32\GDI32.dll
0x77180000 - 0x77283000 C:\WINDOWS\WinSxS\x86_Microsoft.Windows.Common-Controls_6595b64144ccf1df_6.0.2600.6028_x-ww_61e65202\COMCTL32.dll
0x77be0000 - 0x77c38000 C:\WINDOWS\system32\msvcrt.dll
0x77f40000 - 0x77fb6000 C:\WINDOWS\system32\SHLWAPI.dll
0x76300000 - 0x7631d000 C:\WINDOWS\system32\IMM32.DLL
0x62c20000 - 0x62c29000 C:\WINDOWS\system32\LPK.DLL
0x73fa0000 - 0x7400b000 C:\WINDOWS\system32\USP10.dll
0x78aa0000 - 0x78b5f000 C:\Program Files\Java\jdk8\jre\bin\msvcr100.dll
0x6d250000 - 0x6d5e7000 C:\Program Files\Java\jdk8\jre\bin\client\jvm.dll
0x71a40000 - 0x71a4b000 C:\WINDOWS\system32\WSOCK32.dll
0x71a20000 - 0x71a37000 C:\WINDOWS\system32\WS2_32.dll
0x71a10000 - 0x71a18000 C:\WINDOWS\system32\WS2HELP.dll
0x76b10000 - 0x76b3a000 C:\WINDOWS\system32\WINMM.dll
0x76bc0000 - 0x76bcb000 C:\WINDOWS\system32\PSAPI.DLL
0x6f650000 - 0x6f65c000 C:\Program Files\Java\jdk8\jre\bin\verify.dll
0x6dac0000 - 0x6dae1000 C:\Program Files\Java\jdk8\jre\bin\java.dll
0x6f6e0000 - 0x6f6f3000 C:\Program Files\Java\jdk8\jre\bin\zip.dll
0x7d590000 - 0x7dd84000 C:\WINDOWS\system32\SHELL32.dll
0x759d0000 - 0x75a7f000 C:\WINDOWS\system32\USERENV.dll
0x6ee40000 - 0x6ee54000 C:\Program Files\Java\jdk8\jre\bin\net.dll
0x10000000 - 0x10038000 C:\Documents and Settings\Administrator\Local Settings\Application Data\Tudou\FeisuTudou\ikutm.dll
0x76990000 - 0x76ace000 C:\WINDOWS\system32\ole32.dll
0x0b4e0000 - 0x0b51e000 C:\Documents and Settings\Administrator\Local Settings\Application Data\Tudou\FeisuTudou\ikutmco.dll
0x719c0000 - 0x719fe000 C:\WINDOWS\system32\mswsock.dll
0x60fd0000 - 0x61025000 C:\WINDOWS\system32\hnetcfg.dll
0x71a00000 - 0x71a08000 C:\WINDOWS\System32\wshtcpip.dll
0x76d30000 - 0x76d48000 C:\WINDOWS\system32\IPHLPAPI.DLL
0x76d10000 - 0x76d28000 C:\WINDOWS\system32\MPRAPI.dll
0x77c90000 - 0x77cc2000 C:\WINDOWS\system32\ACTIVEDS.dll
0x76de0000 - 0x76e05000 C:\WINDOWS\system32\adsldpc.dll
0x5fdd0000 - 0x5fe25000 C:\WINDOWS\system32\NETAPI32.dll
0x76f30000 - 0x76f5c000 C:\WINDOWS\system32\WLDAP32.dll
0x76af0000 - 0x76b01000 C:\WINDOWS\system32\ATL.DLL
0x770f0000 - 0x7717b000 C:\WINDOWS\system32\OLEAUT32.dll
0x76e50000 - 0x76e5e000 C:\WINDOWS\system32\rtutils.dll
0x71b70000 - 0x71b83000 C:\WINDOWS\system32\SAMLIB.dll
0x76060000 - 0x761b6000 C:\WINDOWS\system32\SETUPAPI.dll
0x6eda0000 - 0x6edaa000 C:\Program Files\Java\jdk8\jre\bin\management.dll
0x76ef0000 - 0x76f17000 C:\WINDOWS\system32\DNSAPI.dll
0x76f80000 - 0x76f88000 C:\WINDOWS\System32\winrnr.dll
0x76f90000 - 0x76f96000 C:\WINDOWS\system32\rasadhlp.dll
0x6ee60000 - 0x6ee6f000 C:\Program Files\Java\jdk8\jre\bin\nio.dll
0x66380000 - 0x664c4000 E:\eclipse4EE\workspace\MongoLoc\SpeedEstimate.dll
0x68d60000 - 0x68e01000 C:\WINDOWS\system32\dbghelp.dll
0x77bd0000 - 0x77bd8000 C:\WINDOWS\system32\VERSION.dllVM Arguments:
jvm_args: -Xms64m -Xmx128m -Xmn64m -Dfile.encoding=GBK
java_command: tong.mongo.loction.MdbFindThread2
java_class_path (initial): E:\eclipse4EE\workspace\MongoLoc\bin;C:\Program Files\Java\jdk1.7.0_71\lib\ext\mongo-java-driver-2.13.0-rc1.jar
Launcher Type: SUN_STANDARDEnvironment Variables:
JAVA_HOME=C:\Program Files\Java\jdk1.7.0_71
CLASSPATH=.;C:\Program Files\Java\jdk1.7.0_71\lib\dt.jar;C:\Program Files\Java\jdk1.7.0_71\lib\tools.jar;C:\Program Files\Java\jre6\lib\rt.jar;D:\apache-tomcat-6.0.43\lib\servlet-api.jar;
PATH=C:/Program Files/Java/jdk1.7.0_71/jre/bin/client;C:/Program Files/Java/jdk1.7.0_71/jre/bin;C:/Program Files/Java/jdk1.7.0_71/jre/lib/i386;C:\apache-maven-3.2.3\bin;C:\Program Files\Java\jdk1.7.0_71\jre\bin;C:\Program Files\Java\jdk8\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;E:\Matlab2013a\runtime\win32;E:\Matlab2013a\bin;E:\runtime\win32;E:\mysql 5.1\bin;C:\Program Files\Microsoft SQL Server\100\Tools\Binn\;C:\Program Files\Microsoft SQL Server\100\DTS\Binn\;C:\Program Files\Microsoft SQL Server\100\Tools\Binn\VSShell\Common7\IDE\;D:\vs2008\Common7\IDE\PrivateAssemblies\;C:\WINDOWS\system32\WindowsPowerShell\v1.0;E:\bin;c:\Program Files\Common Files\Ulead Systems\MPEG;C:\Program Files\Java\jdk1.7.0_71\bin;E:\Android\android-sdk-windows\tools;E:\Android\android-sdk-windows\platform-tools;C:\Program Files\scala\bin;E:\sbt\bin;D:\apache-tomcat-6.0.43\lib;D:\apache-tomcat-6.0.43\bin;E:\mongodb-win32-i386-2.0.7\bin;E:\eclipse4EE\eclipse;
USERNAME=Administrator
OS=Windows_NT
PROCESSOR_IDENTIFIER=x86 Family 6 Model 23 Stepping 6, GenuineIntel--------------- S Y S T E M ---------------OS: Windows XP Build 2600 Service Pack 3CPU:total 2 (2 cores per cpu, 1 threads per core) family 6 model 23 stepping 6, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, tscMemory: 4k page, physical 2085780k(366936k free), swap 2977508k(896652k free)vm_info: Java HotSpot(TM) Client VM (25.11-b03) for windows-x86 JRE (1.8.0_11-b12), built on Jun 16 2014 18:18:58 by "java_re" with MS VC++ 10.0 (VS2010)time: Tue Apr 21 20:34:24 2015
elapsed time: 4 seconds
问题分析：
查阅网上资料，可能原因是内存泄露。
原因是调用c++库的内容有错误。
逐步定位，经检查，发现是代码中初始化数据的时候出现了问题
在这个过程中学习了JNI,JVM结构以及内存管理
参考资料：
http://www.oschina.net/question/248406_120277?sort=default&p=2#answers
